Publicaciones de los grupos de investigación del IIB-INTECH

Año 2018

Alvarez, B., Barra, C., Nielsen, M. and Andreatta, M.
Computational Tools for the Identification and Interpretation of Sequence Motifs in Immunopeptidomes.
Proteomics : en prensa (2018)
Abstract - PDF - LINK - PubMed

Arriola Benitez, P. C., Pesce Viglietti, A. I., Herrmann, C. K., Dennis, V. A., Comerci, D. J., Giambartolomei, G. H. and Delpino, M. V.
Brucella abortus Promotes a Fibrotic Phenotype in Hepatic Stellate Cells, with Concomitant Activation of the Autophagy Pathway.
Infection and Immunity 86(1): (2018)
Abstract - PDF - LINK - PubMed

Bach, N.C., Marino, D.J.G., Natale, G.S. and Somoza, G.M.
Effects of Glyphosate and its commercial formulation, Roundup® Ultramax, on liver histology of tadpoles of the Neotropical frog, Leptodactylus latrans (Amphibia: Anura).
Chemosphere : en prensa (2018)
Abstract - PDF - LINK - PubMed

Blanco, A. M., Sundarrajan, L., Bertucci, J. I. and Unniappan, S.
Why goldfish? Merits and challenges in employing goldfish as a model organism in comparative endocrinology research.
General and Comparative Endocrinology 257: 13-28 (2018)
Abstract - PDF - LINK - PubMed

Bouvier, L. A., Niemirowicz, G. T., Salas-Sarduy, E., Cazzulo, J. J. and Alvarez, V. E.
DNA-damage inducible protein 1 is a conserved metacaspase substrate that is cleaved and further destabilized in yeast under specific metabolic conditions.
FEBS Journal : en prensa (2018)
Abstract - PDF - LINK - PubMed

Castro Berman, M., Marino, D. J. G., Quiroga, M. V. and Zagarese, H.
Occurrence and levels of glyphosate and AMPA in shallow lakes from the Pampean and Patagonian regions of Argentina.
Chemosphere 200: 513-522 (2018)
Abstract - PDF - LINK - PubMed

Epele, L. B., Manzo, L. M., Grech, M. G., Macchi, P., Claverie, A. N., Lagomarsino, L. and Miserendino, M. L.
Disentangling natural and anthropogenic influences on Patagonian pond water quality.
Science of the Total Environment 613-614: 866-876 (2018)
Abstract - PDF - LINK - PubMed

Frasch, A. P., Bouvier, L. A., Oppenheimer, F. M., Juliano, M. A., Juliano, L., Carmona, A. K., Cazzulo, J. J. and Niemirowicz, G. T.
Substrate specificity profiling of M32 metallocarboxypeptidases from Trypanosoma cruzi and Trypanosoma brucei.
Molecular and Biochemical Parasitology 219: 10-16 (2018)
Abstract - PDF - LINK - PubMed

Garavaglia, P. A., Rubio, M. F., Laverriere, M., Tasso, L. M., Fichera, L. E., Cannata, J. J. B. and Garcia, G. A.
Trypanosoma cruzi: death phenotypes induced by ortho-naphthoquinone substrates of the aldo-keto reductase (TcAKR). Role of this enzyme in the mechanism of action of beta-lapachone.
Parasitology : 1-9 (2018)
Abstract - PDF - LINK - PubMed

Gimenez, C. S., Locatelli, P., Montini Ballarin, F., Orlowski, A., Dewey, R. A., Pena, M., Abraham, G. A., Aiello, E. A., Bauza, M. D. R., Cuniberti, L., Olea, F. D. and Crottogini, A.
Aligned ovine diaphragmatic myoblasts overexpressing human connexin-43 seeded on poly (L-lactic acid) scaffolds for potential use in cardiac regeneration.
Cytotechnology 70(2): 651-664 (2018)
Abstract - PDF - LINK - PubMed

Gouw, M., Michael, S., Samano-Sanchez, H., Kumar, M., Zeke, A., Lang, B., Bely, B., Chemes, L. B., Davey, N. E., Deng, Z., Diella, F., Gurth, C. M., Huber, A. K., Kleinsorg, S., Schlegel, L. S., Palopoli, N., Roey, K. V., Altenberg, B., Remenyi, A., Dinkel, H. and Gibson, T. J.
The eukaryotic linear motif resource - 2018 update.
Nucleic Acids Research 46(D1): D428-D434 (2018)
Abstract - PDF - LINK - PubMed

Herrera, M. G., Vazquez, D. S., Sreij, R., Drechsler, M., Hertle, Y., Hellweg, T. and Dodero, V. I.
Insights into gliadin supramolecular organization at digestive pH 3.0.
Colloids and Surfaces B: Biointerfaces 165: 363-370 (2018)
Abstract - PDF - LINK - PubMed

Iriarte, L. S., Midlej, V., Frontera, L. S., Moros Duarte, D., Barbeito, C. G., de Souza, W., Benchimol, M., de Miguel, N. and Coceres, V. M.
TfVPS32 Regulates Cell Division in the Parasite Tritrichomonas foetus.
Journal of Eukaryotic Microbiology 65(1): 28-37 (2018)
Abstract - PDF - LINK - PubMed

Iribarren, P. A., Di Marzio, L. A., Berazategui, M. A., De Gaudenzi, J. G. and Alvarez, V. E.
SUMO polymeric chains are involved in nuclear foci formation and chromatin organization in Trypanosoma brucei procyclic forms.
PloS One 13(2): e0193528 (2018)
Abstract - PDF - LINK - PubMed

Jappe, E. C., Kringelum, J., Trolle, T. and Nielsen, M.
Predicted MHC peptide binding promiscuity explains MHC class I 'hotspots' of antigen presentation defined by mass spectrometry eluted ligand data.
Immunology : en prensa (2018)
Abstract - PDF - LINK - PubMed

Jensen, K. K., Andreatta, M., Marcatili, P., Buus, S., Greenbaum, J. A., Yan, Z., Sette, A., Peters, B. and Nielsen, M.
Improved methods for predicting peptide binding affinity to MHC class II molecules.
Immunology : en prensa (2018)
Abstract - PDF - LINK - PubMed

Lanzarotti, E., Marcatili, P. and Nielsen, M.
Identification of the cognate peptide-MHC target of T cell receptors using molecular modeling and force field scoring.
Molecular Immunology 94: 91-97 (2018)
Abstract - PDF - LINK - PubMed

Marem, A., Okamoto, D. N., Oliveira, L. C. G., Ruiz, D. M., Paggi, R. A., Kondo, M. Y., Gouvea, I. E., Juliano, M. A., de Castro, R. E., Juliano, L. and Icimoto, M. Y.
Functional roles of C-terminal extension (CTE) of salt-dependent peptidase activity of the Natrialba magadii extracellular protease (NEP).
International Journal of Biological Macromolecules : en prensa (2018)
Abstract - PDF - LINK - PubMed

Nielsen, M., Connelley, T. and Ternette, N.
Improved Prediction of Bovine Leucocyte Antigens (BoLA) Presented Ligands by Use of Mass-Spectrometry-Determined Ligand and in Vitro Binding Data.
Journal of Proteome Research 17(1): 559-567 (2018)
Abstract - PDF - LINK - PubMed

Nievas, Y. R., Vashisht, A. A., Corvi, M. M., Metz, S., Johnson, P. J., Wohlschlegel, J. A. and de Miguel, N.
Protein palmitoylation plays an important role in Trichomonas vaginalis adherence.
Molecular and Cellular Proteomics : en prensa (2018)
Abstract - PDF - LINK - PubMed

Palopoli, N., Gonzalez Foutel, N. S., Gibson, T. J. and Chemes, L. B.
Short linear motif core and flanking regions modulate retinoblastoma protein binding affinity and specificity.
Protein Engineering Design and Selection : en prensa (2018)
Abstract - PDF - LINK - PubMed

Pascual, M. J., Merwaiss, F., Leal, E., Quintana, M. E., Capozzo, A. V., Cavasotto, C. N., Bollini, M. and Alvarez, D. E.
Structure-based drug design for envelope protein E2 uncovers a new class of bovine viral diarrhea inhibitors that block virus entry.
Antiviral Research 149: 179-190 (2018)
Abstract - PDF - LINK - PubMed

Ramos-Artuso, F., Galatro, A., Buet, A., Santa-Maria, G. E. and Simontacchi, M.
Key acclimation responses to phosphorus deficiency in maize plants are influenced by exogenous nitric oxide.
Journal of Plant Physiology 222: 51-58 (2018)
Abstract - PDF - LINK - PubMed

Rasse-Suriani, F. A. O., Garcia-Einschlag, F. S., Rafti, M., Schmidt De Leon, T., David Gara, P. M., Erra-Balsells, R. and Cabrerizo, F. M.
Photophysical and Photochemical Properties of Naturally Occurring normelinonine F and Melinonine F Alkaloids and Structurally Related N(2)- and/or N(9)-methyl-beta-carboline Derivatives.
Photochemistry and Photobiology 94(1): 36-51 (2018)
Abstract - PDF - LINK - PubMed

Romero, F. M., Maiale, S. J., Rossi, F. R., Marina, M., Ruiz, O. A. and Garriz, A.
Polyamine Metabolism Responses to Biotic and Abiotic Stress.
Methods in Molecular Biology 1694: 37-49 (2018)
Abstract - PDF - LINK - PubMed

Rossi, F. R., Romero, F. M., Ruiz, O. A., Marina, M. and Garriz, A.
Phenotypic and Genotypic Characterization of Mutant Plants in Polyamine Metabolism Genes During Pathogenic Interactions.
Methods in Molecular Biology 1694: 405-416 (2018)
Abstract - PDF - LINK - PubMed

Scaia, M.F., Morandini, L., Noguera, C.A., Ramallo, M.R., Somoza, G.M. and Pandolfi, M.
Fighting cichlids: Dynamic of intrasexual aggression in dyadic agonistic encounters.
Behavioural Processes 147: 61–69 (2018)

Shao, W., Pedrioli, P. G. A., Wolski, W., Scurtescu, C., Schmid, E., Vizcaino, J. A., Courcelles, M., Schuster, H., Kowalewski, D., Marino, F., Arlehamn, C. S. L., Vaughan, K., Peters, B., Sette, A., Ottenhoff, T. H. M., Meijgaarden, K. E., Nieuwenhuizen, N., Kaufmann, S. H. E., Schlapbach, R., Castle, J. C., Nesvizhskii, A. I., Nielsen, M., Deutsch, E. W., Campbell, D. S., Moritz, R. L., Zubarev, R. A., Ytterberg, A. J., Purcell, A. W., Marcilla, M., Paradela, A., Wang, Q., Costello, C. E., Ternette, N., van Veelen, P. A., van Els, Cacm, Heck, A. J. R., de Souza, G. A., Sollid, L. M., Admon, A., Stevanovic, S., Rammensee, H. G., Thibault, P., Perreault, C., Bassani-Sternberg, M., Aebersold, R. and Caron, E.
The SysteMHC Atlas project.
Nucleic Acids Research 46(D1): D1237-D1247 (2018)
Abstract - PDF - LINK - PubMed

Valguarnera, E., Spera, J.M., Czibener, C., Fulgenzi, F.R., Casabuono, A.C., Altabe, S.G., Pasquevich, K.A., Guaimas, F., Cassataro, J., Couto, A.S. and Ugalde, J.E.
RomA, a Periplasmic Protein Involved in the Synthesis of the Lipopolysaccharide Tunes Down the Inflammatory Response Triggered by Brucella.
The Journal of Infectious Diseases : en prensa (2018)
Abstract - PDF - LINK - PubMed

Yanuk, J. G., Denofrio, M. P., Rasse-Suriani, F. A. O., Villarruel, F. D., Fassetta, F., Garcia Einschlag, F. S., Erra-Balsells, R., Epe, B. and Cabrerizo, F. M.
DNA damage photo-induced by chloroharmine isomers: hydrolysis versus oxidation of nucleobases.
Organic & Biomolecular Chemistry : en prensa (2018)
Abstract - PDF - LINK - PubMed

Zalguizuri, A., Caetano-Anollés, G. and Lepek V. C.
Phylogenetic profiling, an untapped resource for the prediction of secreted proteins and its complementation with sequence-based classifiers in bacterial type III, IV and VI secretion systems.
Briefings in Bioinformatics : bby009 (2018)
Abstract - PDF - LINK - PubMed

Zschach, H., Larsen, M. V., Hasman, H., Westh, H., Nielsen, M., Miedzybrodzki, R., Jonczyk-Matysiak, E., Weber-Dabrowska, B. and Gorski,
Use of a Regression Model to Study Host-Genomic Determinants of Phage Susceptibility in MRSA.
Antibiotics (Basel) 7(1): (2018)
Abstract - PDF - LINK - PubMed




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Chagas Disease Diagnostic Applications: Present Knowledge and Future Steps.

Balouz, V., Agüero, F. and Buscaglia, C.A.

Advances in Parasitology
Volume 97 , Chapter 1 pages 1-45 (2017)

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The Trypanosoma cruzi surface, a nanoscale patchwork quilt.

Mucci, J., Lantos, A.B., Buscaglia, C.A., Leguizamón, M.S. and Campetella, O.

Trends in Parasitology
Volume 33 , Issue 2 , 102 - 112 (2017)

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Albumin–Folate Conjugates for Drug-targeting in Photodynamic Therapy.

Butzbach K, Rasse-Suriani FA, Gonzalez MM, Cabrerizo FM, Epe B.

Photochem Photobiol.
Volume 92, Issue 4, pp 611-619 (2016)

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Towards high-throughput immunomics for infectious diseases: use of next-generation peptide microarrays for rapid discovery and mapping of antigenic determinants.

Carmona SJ, Nielsen M, Schäfer-Nielsen C, Altcheh J, Mucci JS, Balouz V, Tekiel V, Frasch AC, Campetella O, Buscaglia CA, Agüero F.

Mol Cell Proteomics
Volume 14, Issue 1, pp 1871-1884 (2015)

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Shallow lakes from the Central Plains of Argentina: an overview and worldwide comparative analysis of their basic limnological features.

Nadia Diovisalvi, Vanesa Y. Bohn, María Cintia Piccolo, Gerardo M. E. Perillo, Claudio Baigún, Horacio E. Zagarese

Volume 752, Issue 1, pp 5-20

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Plant interactions with other organisms: molecules, ecology and evolution.

Amy T. Austin and Carlos L. Ballaré

New Phytologist.
Volume 204, Issue 2, pages 257–260, October 2014

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Linking phytochrome to plant immunity: low red : far-red ratios increase Arabidopsis susceptibility to Botrytis cinerea by reducing the biosynthesis of indolic glucosinolates and camalexin.

Cargnel MD, Demkura PV, Ballaré CL.

New Phytologist.
Volume 204, Issue 2, pages 42-54, October 2014.

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Identification of a type IV secretion substrate of Brucella abortus that participates in the early stages of intracellular survival.

Döhmer PH, Valguarnera E, Czibener C, Ugalde JE.

Cellular Microbiology.
Volume 6, Issue 3, pp 396-410 (2014)

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No time for candy: passionfruit (Passiflora edulis) plants down-regulate damage-induced extra floral nectar production in response to light signals of competition

Miriam M. Izaguirre, Carlos A. Mazza, María S. Astigueta, Ana M. Ciarla, Carlos L. Ballaré

Volume 173, Issue 1, pp 213-221 (2013)

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DNA methyltransferase3A as a molecular switch mediating the neural tube-to-neural crest fate transition.

Hu, N.; Strobl-Mazzulla, P.H.; Sauka-Spengler, T.; Bronner, M.

Genes & Development
26(21):2380-2385 (2012)

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Fast motility of the malaria transmission stage is essential for intra-dermal migration and triggered by the small heat-shock protein sHSP20.

Montagna G, Buscaglia CA, Münter S, Brinkmann V, Frischknecht F, Matuschewski K.

J Biol Chem
287, 2410-2422 (2012)

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Toxoplasma gondii: without stress there is no life.

Figueras MJ, Angel SO, Cóceres VM and Alomar ML.

Stress Response in Microbiology.
Ed. Jose M. Requena. Caister Academic Press, Chapter 13, 303-319, 2012.

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Neuronal glycoprotein M6a induces filopodia formation via association with cholesterol-rich lipid rafts.

Scorticati C, Formoso K, Frasch AC.

J Neurochem. 2011
Mar 23. doi: 10.1111/j.1471-4159.2011.07252.x. [Epub ahead of print]

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Dendritic arbors of developing retinal ganglion cells are stabilized by beta 1-integrins.

Marrs GS, Honda T, Fuller L, Thangavel R, Balsamo J, Lilien J, Dailey ME and Arregui C.

Molecular and Cellular Neuroscience 2006
Volume 32, Issue 3 , Pages 230-241

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The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease.

El-Sayed NM et al

Science 2005
Volume 309, Issue 5733, Pages 409-415

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The genome of the kinetoplastid parasite, Leishmania major.

Ivens AC et al

Science 2005
Volume 309, Issue 5733, Pages 436-442
Role of N-oligosaccharide endoplasmic reticulum processing reactions in glycoprotein folding and degradation.

Parodi, A.J.

Biochem J. 2000
Volume 348, Issue 1, Pages 1-13.
Structural basis of sialyltransferase activity in trypanosomal sialidases

Alejandro Buschiazzo, Gisele A. Tavares1, Oscar Campetella, Silvia Spinelli, Marfa L. Cremona, Gastón París, Maria Fernanda Amaya, Alberto C.C. Frasch and Pedro M. Alzari

The EMBO Journal 2000
Volume 19, Issue 1, Pages 16 - 24